Researcher Profile

Anderson, BD & Bisanz, JE 2023, 'Challenges and opportunities of strain diversity in gut microbiome research', Frontiers in Microbiology, vol. 14, 1117122. https://doi.org/10.3389/fmicb.2023.1117122

Kim, MS & Bisanz, JE 2023, 'Meta-organismal metabolism in cardiovascular disease', Cell Host and Microbe, vol. 31, no. 1, pp. 1-2. https://doi.org/10.1016/j.chom.2022.12.007

Carmody, RN & Bisanz, JE 2023, 'Roles of the gut microbiome in weight management', Nature Reviews Microbiology, vol. 21, no. 8, pp. 535-550. https://doi.org/10.1038/s41579-023-00888-0

Noecker, C, Sanchez, J, Bisanz, JE, Escalante, V, Alexander, M, Trepka, K, Heinken, A, Liu, Y, Dodd, D, Thiele, I, DeFelice, BC & Turnbaugh, PJ 2023, 'Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta', PLoS biology, vol. 21, no. 5, e3002125. https://doi.org/10.1371/journal.pbio.3002125

Collins, SL, Stine, JG, Bisanz, JE, Okafor, CD & Patterson, AD 2023, 'Bile acids and the gut microbiota: metabolic interactions and impacts on disease', Nature Reviews Microbiology, vol. 21, no. 4, pp. 236-247. https://doi.org/10.1038/s41579-022-00805-x

Sbierski-Kind, J, Grenkowitz, S, Schlickeiser, S, Sandforth, A, Friedrich, M, Kunkel, D, Glauben, R, Brachs, S, Mai, K, Thürmer, A, Radonić, A, Drechsel, O, Turnbaugh, PJ, Bisanz, JE, Volk, HD, Spranger, J & von Schwartzenberg, RJ 2022, 'Effects of caloric restriction on the gut microbiome are linked with immune senescence', Microbiome, vol. 10, no. 1, 57. https://doi.org/10.1186/s40168-022-01249-4

Paik, D, Yao, L, Zhang, Y, Bae, S, D’Agostino, GD, Zhang, M, Kim, E, Franzosa, EA, Avila-Pacheco, J, Bisanz, JE, Rakowski, CK, Vlamakis, H, Xavier, RJ, Turnbaugh, PJ, Longman, RS, Krout, MR, Clish, CB, Rastinejad, F, Huttenhower, C, Huh, JR & Devlin, AS 2022, 'Human gut bacteria produce Τ_Η17-modulating bile acid metabolites', Nature, vol. 603, no. 7903, pp. 907-912. https://doi.org/10.1038/s41586-022-04480-z

Tian, S & Bisanz, JE 2022, 'Making gut microbiomes from scratch', Cell Host and Microbe, vol. 30, no. 11, pp. 1508-1509. https://doi.org/10.1016/j.chom.2022.10.005

von Schwartzenberg, RJ, Bisanz, JE, Lyalina, S, Spanogiannopoulos, P, Ang, QY, Cai, J, Dickmann, S, Friedrich, M, Liu, SY, Collins, SL, Ingebrigtsen, D, Miller, S, Turnbaugh, JA, Patterson, AD, Pollard, KS, Mai, K, Spranger, J & Turnbaugh, PJ 2021, 'Caloric restriction disrupts the microbiota and colonization resistance', Nature, vol. 595, no. 7866, pp. 272-277. https://doi.org/10.1038/s41586-021-03663-4

Lam, KN, Spanogiannopoulos, P, Soto-Perez, P, Alexander, M, Nalley, MJ, Bisanz, JE, Nayak, RR, Weakley, AM, Yu, FB & Turnbaugh, PJ 2021, 'Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome', Cell Reports, vol. 37, no. 5, 109930. https://doi.org/10.1016/j.celrep.2021.109930

Genomic Standards Consortium & Massive Analysis and Quality Control Society 2021, 'Reporting guidelines for human microbiome research: the STORMS checklist', Nature Medicine, vol. 27, no. 11, pp. 1885-1892. https://doi.org/10.1038/s41591-021-01552-x

Ang, QY, Alba, DL, Upadhyay, V, Bisanz, JE, Cai, J, Lee, HL, Barajas, E, Wei, G, Noecker, C, Patterson, AD, Koliwad, SK & Turnbaugh, PJ 2021, 'The east asian gut microbiome is distinct from colocalized white subjects and connected to metabolic health', eLife, vol. 10, e70349. https://doi.org/10.7554/eLife.70349

Bisanz, JE, Soto-Perez, P, Noecker, C, Aksenov, AA, Lam, KN, Kenney, GE, Bess, EN, Haiser, HJ, Kyaw, TS, Yu, FB, Rekdal, VM, Ha, CWY, Devkota, S, Balskus, EP, Dorrestein, PC, Allen-Vercoe, E & Turnbaugh, PJ 2020, 'A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria', Cell Host and Microbe, vol. 27, no. 6, pp. 1001-1013.e9. https://doi.org/10.1016/j.chom.2020.04.006

Man, K, Bowman, C, Braverman, KN, Escalante, V, Tian, Y, Bisanz, JE, Ganeshan, K, Wang, B, Patterson, A, Bayrer, JR, Turnbaugh, PJ & Chawla, A 2020, 'A thermogenic fat-epithelium cell axis regulates intestinal disease tolerance', Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 50, pp. 32029-32037. https://doi.org/10.1073/pnas.2012003117

Rekdal, VM, Bernadino, PN, Luescher, MU, Kiamehr, S, Le, C, Bisanz, JE, Turnbaugh, PJ, Bess, EN & Balskus, EP 2020, 'A widely distributed metalloenzyme class enables gut microbial metabolism of host-and diet-derived catechols', eLife, vol. 9, e50845. https://doi.org/10.7554/eLife.50845

Greenstein, RA, Barrales, RR, Sanchez, NA, Bisanz, JE, Braun, S & Al-Sady, B 2020, 'Erratum: Set1/COMPASS repels heterochromatin invasion at euchromatic sites by disrupting Suv39/Clr4 activity and nucleosome stability (Genes Dev. (2020) 34 DOI: 10.1101/gad.342006.120)', Genes and Development, vol. 34, no. 15-16, pp. 1106. https://doi.org/10.1101/GAD.342006.120

Bess, EN, Bisanz, JE, Yarza, F, Bustion, A, Rich, BE, Li, X, Kitamura, S, Waligurski, E, Ang, QY, Alba, DL, Spanogiannopoulos, P, Nayfach, S, Koliwad, SK, Wolan, DW, Franke, AA & Turnbaugh, PJ 2020, 'Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria', Nature Microbiology, vol. 5, no. 1, pp. 56-66. https://doi.org/10.1038/s41564-019-0596-1

Pröbstel, AK, Zhou, X, Baumann, R, Wischnewski, S, Kutza, M, Rojas, OL, Sellrie, K, Bischof, A, Kim, K, Ramesh, A, Dandekar, R, Greenfield, AL, Schubert, RD, Bisanz, JE, Vistnes, S, Khaleghi, K, Landefeld, J, Kirkish, G, Liesche-Starnecker, F, Ramaglia, V, Singh, S, Tran, EB, Barba, P, Zorn, K, Oechtering, J, Forsberg, K, Shiow, LR, Henry, RG, Graves, J, Cree, BAC, Hauser, SL, Kuhle, J, Gelfand, JM, Andersen, PM, Schlegel, J, Turnbaugh, PJ, Seeberger, PH, Gommerman, JL, Wilson, MR, Schirmer, L & Baranzini, SE 2020, 'Gut microbiota–specific iga⁺ B cells traffic to the CNS in active multiple sclerosis', Science Immunology, vol. 5, no. 53, abc7191. https://doi.org/10.1126/SCIIMMUNOL.ABC7191

Greenstein, RA, Barrales, RR, Sanchez, NA, Bisanz, JE, Braun, S & Al-Sady, B 2020, 'Set1/COMPASS repels heterochromatin invasion at euchromatic sites by disrupting Suv39/Clr4 activity and nucleosome stability', Genes & development, vol. 34, no. 1-2, pp. 99-117. https://doi.org/10.1101/gad.328468.119

Bolyen, E, Rideout, JR, Dillon, MR, Bokulich, NA, Abnet, CC, Al-Ghalith, GA, Alexander, H, Alm, EJ, Arumugam, M, Asnicar, F, Bai, Y, Bisanz, JE, Bittinger, K, Brejnrod, A, Brislawn, CJ, Brown, CT, Callahan, BJ, Caraballo-Rodríguez, AM, Chase, J, Cope, EK, Da Silva, R, Diener, C, Dorrestein, PC, Douglas, GM, Durall, DM, Duvallet, C, Edwardson, CF, Ernst, M, Estaki, M, Fouquier, J, Gauglitz, JM, Gibbons, SM, Gibson, DL, Gonzalez, A, Gorlick, K, Guo, J, Hillmann, B, Holmes, S, Holste, H, Huttenhower, C, Huttley, GA, Janssen, S, Jarmusch, AK, Jiang, L, Kaehler, BD, Kang, KB, Keefe, CR, Keim, P, Kelley, ST, Knights, D, Koester, I, Kosciolek, T, Kreps, J, Langille, MGI, Lee, J, Ley, R, Liu, YX, Loftfield, E, Lozupone, C, Maher, M, Marotz, C, Martin, BD, McDonald, D, McIver, LJ, Melnik, AV, Metcalf, JL, Morgan, SC, Morton, JT, Naimey, AT, Navas-Molina, JA, Nothias, LF, Orchanian, SB, Pearson, T, Peoples, SL, Petras, D, Preuss, ML, Pruesse, E, Rasmussen, LB, Rivers, A, Robeson, MS, Rosenthal, P, Segata, N, Shaffer, M, Shiffer, A, Sinha, R, Song, SJ, Spear, JR, Swafford, AD, Thompson, LR, Torres, PJ, Trinh, P, Tripathi, A, Turnbaugh, PJ, Ul-Hasan, S, van der Hooft, JJJ, Vargas, F, Vázquez-Baeza, Y, Vogtmann, E, von Hippel, M, Walters, W, Wan, Y, Wang, M, Warren, J, Weber, KC, Williamson, CHD, Willis, AD, Xu, ZZ, Zaneveld, JR, Zhang, Y, Zhu, Q, Knight, R & Caporaso, JG 2019, 'Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)', Nature Biotechnology, vol. 37, no. 9, pp. 1091. https://doi.org/10.1038/s41587-019-0252-6

Soto-Perez, P, Bisanz, JE, Berry, JD, Lam, KN, Bondy-Denomy, J & Turnbaugh, PJ 2019, 'CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog', Cell Host and Microbe, vol. 26, no. 3, pp. 325-335.e5. https://doi.org/10.1016/j.chom.2019.08.008

Carmody, RN, Bisanz, JE, Bowen, BP, Maurice, CF, Lyalina, S, Louie, KB, Treen, D, Chadaideh, KS, Maini Rekdal, V, Bess, EN, Spanogiannopoulos, P, Ang, QY, Bauer, KC, Balon, TW, Pollard, KS, Northen, TR & Turnbaugh, PJ 2019, 'Cooking shapes the structure and function of the gut microbiome', Nature Microbiology, vol. 4, no. 12, pp. 2052-2063. https://doi.org/10.1038/s41564-019-0569-4

Rekdal, VM, Bess, EN, Bisanz, JE, Turnbaugh, PJ & Balskus, EP 2019, 'Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism', Science, vol. 364, no. 6445, eaau6323. https://doi.org/10.1126/science.aau6323

Daisley, BA, Monachese, M, Trinder, M, Bisanz, JE, Chmiel, JA, Burton, JP & Reid, G 2019, 'Immobilization of cadmium and lead by Lactobacillus rhamnosus GR-1 mitigates apical-to-basolateral heavy metal translocation in a Caco-2 model of the intestinal epithelium', Gut microbes, vol. 10, no. 3, pp. 321-333. https://doi.org/10.1080/19490976.2018.1526581

Bisanz, JE, Upadhyay, V, Turnbaugh, JA, Ly, K & Turnbaugh, PJ 2019, 'Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet', Cell Host and Microbe, vol. 26, no. 2, pp. 265-272.e4. https://doi.org/10.1016/j.chom.2019.06.013

Chagwedera, DN, Ang, QY, Bisanz, JE, Leong, YA, Ganeshan, K, Cai, J, Patterson, AD, Turnbaugh, PJ & Chawla, A 2019, 'Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass', Cell Metabolism, vol. 30, no. 2, pp. 364-373.e7. https://doi.org/10.1016/j.cmet.2019.05.002

Bolyen, E, Rideout, JR, Dillon, MR, Bokulich, NA, Abnet, CC, Al-Ghalith, GA, Alexander, H, Alm, EJ, Arumugam, M, Asnicar, F, Bai, Y, Bisanz, JE, Bittinger, K, Brejnrod, A, Brislawn, CJ, Brown, CT, Callahan, BJ, Caraballo-Rodríguez, AM, Chase, J, Cope, EK, Da Silva, R, Diener, C, Dorrestein, PC, Douglas, GM, Durall, DM, Duvallet, C, Edwardson, CF, Ernst, M, Estaki, M, Fouquier, J, Gauglitz, JM, Gibbons, SM, Gibson, DL, Gonzalez, A, Gorlick, K, Guo, J, Hillmann, B, Holmes, S, Holste, H, Huttenhower, C, Huttley, GA, Janssen, S, Jarmusch, AK, Jiang, L, Kaehler, BD, Kang, KB, Keefe, CR, Keim, P, Kelley, ST, Knights, D, Koester, I, Kosciolek, T, Kreps, J, Langille, MGI, Lee, J, Ley, R, Liu, YX, Loftfield, E, Lozupone, C, Maher, M, Marotz, C, Martin, BD, McDonald, D, McIver, LJ, Melnik, AV, Metcalf, JL, Morgan, SC, Morton, JT, Naimey, AT, Navas-Molina, JA, Nothias, LF, Orchanian, SB, Pearson, T, Peoples, SL, Petras, D, Preuss, ML, Pruesse, E, Rasmussen, LB, Rivers, A, Robeson, MS, Rosenthal, P, Segata, N, Shaffer, M, Shiffer, A, Sinha, R, Song, SJ, Spear, JR, Swafford, AD, Thompson, LR, Torres, PJ, Trinh, P, Tripathi, A, Turnbaugh, PJ, Ul-Hasan, S, van der Hooft, JJJ, Vargas, F, Vázquez-Baeza, Y, Vogtmann, E, von Hippel, M, Walters, W, Wan, Y, Wang, M, Warren, J, Weber, KC, Williamson, CHD, Willis, AD, Xu, ZZ, Zaneveld, JR, Zhang, Y, Zhu, Q, Knight, R & Caporaso, JG 2019, 'Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2', Nature Biotechnology, vol. 37, no. 8, pp. 852-857. https://doi.org/10.1038/s41587-019-0209-9