Rongling Wu, PhD - Penn State Cancer Institute
Researcher Profile
Rongling Wu, PhD
Distinguished Professor, Department of Public Health Sciences
Division of Biostatistics and Bioinformatics
Division of Biostatistics and Bioinformatics
Scientific Program:Cancer Control
Recent Publications
2024
Cao, DQ, Jin, Y, Liu, H, Lei, SC, Song, YX, Han, JL, Hao, XD, Ma, MG, Zhang, Z & Wu, R 2024, 'Concentration properties of biopolymers via dead-end forward osmosis', International Journal of Biological Macromolecules, vol. 270, 132338. https://doi.org/10.1016/j.ijbiomac.2024.132338
Cao, DQ, Fang, RK, Song, YX, Ma, MG, Li, H, Hao, XD, Wu, R & Chen, X 2024, 'Contact-electro-catalysis for degradation of trace antibiotics in wastewater', Chemical Engineering Journal, vol. 487, 150531. https://doi.org/10.1016/j.cej.2024.150531
Lu, K, Gong, H, Yang, D, Ye, M, Fang, Q, Zhang, XY & Wu, R 2024, 'Genome-Wide Network Analysis of Above- and Below-Ground Co-growth in Populus euphratic', Plant Phenomics, vol. 6, 0131. https://doi.org/10.34133/plantphenomics.0131
fan, G, Yang, W, Wang, D, Xu, F, Wang, Y, Si, C, Zhai, Z, Li, Z, Wu, R, Cao, B & Yang, W 2024, 'Prolonged lymphopenia and prognoses among inpatients with different respiratory virus infections: A retrospective cohort study', Heliyon, vol. 10, no. 11, e31733. https://doi.org/10.1016/j.heliyon.2024.e31733
Griffin, C, Feng, L & Wu, R 2024, 'Spatial dynamics of higher order rock-paper-scissors and generalisations', Journal of Physics A: Mathematical and Theoretical, vol. 57, no. 18, 185701. https://doi.org/10.1088/1751-8121/ad3bf6
Amin, M, Wu, R, Postolache, TT & Gragnoli, C 2024, 'The prolactin receptor (PRLR) gene is linked to and associated with the comorbidity of depression and type 2 diabetes in Italian families', Genes and Diseases, vol. 11, no. 3, 101048. https://doi.org/10.1016/j.gendis.2023.06.018
Amin, M, Rafla, B, Wu, R, Postolache, TT & Gragnoli, C 2024, 'The role of melatonin receptor 1B gene (MTNR1B) in the susceptibility to depression and type 2 diabetes comorbidity', Genes and Diseases, vol. 11, no. 3, 101067. https://doi.org/10.1016/j.gendis.2023.06.036
Dwivedi, SL, Quiroz, LF, Spillane, C, Wu, R, Mattoo, AK & Ortiz, R 2024, 'Unlocking allelic variation in circadian clock genes to develop environmentally robust and productive crops', Planta, vol. 259, no. 4, 72. https://doi.org/10.1007/s00425-023-04324-8
Wang, Z, Ye, M, Zhang, H & Wu, R 2024, '功能作图的混合效应模型开发', Beijing Linye Daxue Xuebao/Journal of Beijing Forestry University, vol. 46, no. 5, pp. 163-172. https://doi.org/10.12171/j.1000-1522.20220416
2023
Chen, C, Shen, B, Zhang, L, Yu, T, Wang, M & Wu, R 2023, 'A Cartographic Tool to Predict Disease Risk-associated Pseudo-Dynamic Networks from Tissue-specific Gene Expression', Bio-protocol, vol. 13, no. 1, e4583. https://doi.org/10.21769/BioProtoc.4583
Feng, L, Yang, W, Ding, M, Hou, L, Gragnoli, C, Griffin, C & Wu, R 2023, 'A personalized pharmaco-epistatic network model of precision medicine', Drug Discovery Today, vol. 28, no. 7, 103608. https://doi.org/10.1016/j.drudis.2023.103608
Wang, Y, Sang, M, Feng, L, Gragnoli, C, Griffin, C & Wu, R 2023, 'A pleiotropic–epistatic entangelement model of drug response', Drug Discovery Today, vol. 28, no. 11, 103790. https://doi.org/10.1016/j.drudis.2023.103790
Li, C, Yin, L, He, X, Jin, Y, Zhu, X & Wu, R 2023, 'Competition-cooperation mechanism between Escherichia coli and Staphylococcus aureus based on systems mapping', Frontiers in Microbiology, vol. 14, 1192574. https://doi.org/10.3389/fmicb.2023.1192574
Wang, Z, Duan, R, Pang, X, Wu, R, Guo, B & Xu, J 2023, 'Critical Size and Formation Mechanism of Secondary Nuclei in Melt-Crystallized Polylactide Stereocomplex Crystals', Macromolecules, vol. 56, no. 3, pp. 999-1012. https://doi.org/10.1021/acs.macromol.2c02494
Zhang, H, Cao, Y, Wang, Z, Ye, M & Wu, R 2023, 'Functional Mapping of Genes Modulating Plant Shade Avoidance Using Leaf Traits', Plants, vol. 12, no. 3, 608. https://doi.org/10.3390/plants12030608
Qi, M, Wang, S, Li, N, Li, L, Zhang, Y, Xue, J, Wang, J, Wu, R & Lian, N 2023, 'Genome-wide analysis of TPX2 gene family in Populus trichocarpa and its specific response genes under various abiotic stresses', Frontiers in Plant Science, vol. 14, 1159181. https://doi.org/10.3389/fpls.2023.1159181
Yang, Y, Wang, J, Xu, Y, Abbas, F, Xu, D, Tao, S, Xie, X, Song, F, Huang, Q, Sharma, A, Zheng, L, Yan, D, Wang, X, Zheng, B, Yuan, H, Wu, R & He, Y 2023, 'Genome-wide identification and expression analysis of AUX/LAX family genes in Chinese hickory (Carya cathayensis Sarg.) Under various abiotic stresses and grafting', Frontiers in Plant Science, vol. 13, 1060965. https://doi.org/10.3389/fpls.2022.1060965
Griffin, C & Wu, R 2023, 'Higher-order dynamics in the replicator equation produce a limit cycle in rock-paper-scissors', Europhysics Letters, vol. 142, no. 3, 33001. https://doi.org/10.1209/0295-5075/accd93
del Bosque-Plata, L, Amin, M, González-Ramírez, R, Wu, R, Postolache, TT, Vergare, M, Gordon, D & Gragnoli, C 2023, 'LD block disorder-specific pleiotropic roles of novel CRHR1 in type 2 diabetes and depression disorder comorbidity', European Archives of Psychiatry and Clinical Neuroscience. https://doi.org/10.1007/s00406-023-01710-x
Amin, M, Wu, R & Gragnoli, C 2023, 'Novel Risk Variants in the Oxytocin Receptor Gene (OXTR) Possibly Linked to and Associated with Familial Type 2 Diabetes', International journal of molecular sciences, vol. 24, no. 7, 6282. https://doi.org/10.3390/ijms24076282
Del Bosque-Plata, L, Amin, M, Wu, R, Postolache, TT & Gragnoli, C 2023, 'Novel TCF7L2 familial linkage and association with Type 2 diabetes, depression, and their comorbidity', European Review for Medical and Pharmacological Sciences, vol. 27, no. 2, pp. 694-703. https://doi.org/10.26355/eurrev_202301_31072
Amin, M, Horst, N, Wu, R & Gragnoli, C 2023, 'Novel corticotropin-releasing hormone receptor genes (CRHR1 and CRHR2) linkage to and association with polycystic ovary syndrome', Journal of Ovarian Research, vol. 16, no. 1, 155. https://doi.org/10.1186/s13048-023-01159-5
Amin, M, Wu, R, Postolache, TT & Gragnoli, C 2023, 'Novel implication of the prolactin (PRL) gene in the comorbidity of type 2 diabetes and depression', European Review for Medical and Pharmacological Sciences, vol. 27, no. 9, pp. 4080-4084. https://doi.org/10.26355/eurrev_202305_32315
Amin, M, Horst, N, Wu, R & Gragnoli, C 2023, 'Oxytocin receptor (OXTR) is a risk gene for polycystic ovarian syndrome', European Review for Medical and Pharmacological Sciences, vol. 27, no. 6, pp. 2634-2639. https://doi.org/10.26355/eurrev_202303_31800
Lu, K, Wang, X, Gong, H, Yang, D, Ye, M, Fang, Q, Zhang, XY & Wu, R 2023, 'The genetic architecture of trait covariation in Populus euphratica, a desert tree', Frontiers in Plant Science, vol. 14, 1149879. https://doi.org/10.3389/fpls.2023.1149879
Sang, M, Feng, L, Dong, A, Gragnoli, C, Griffin, C & Wu, R 2023, 'The genomic physics of tumor–microenvironment crosstalk', Physics Reports, vol. 1029, pp. 1-51. https://doi.org/10.1016/j.physrep.2023.07.006
Wu, S, Liu, X, Dong, A, Gragnoli, C, Griffin, C, Wu, J, Yau, ST & Wu, R 2023, 'The metabolomic physics of complex diseases', Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 42, e2308496120. https://doi.org/10.1073/pnas.2308496120
Amin, M, Perrelli, M, Wu, R & Gragnoli, C 2023, 'The mineralocorticoid receptor gene (NR3C2) is linked to and associated with polycystic ovarian syndrome in Italian families', European Review for Medical and Pharmacological Sciences, vol. 27, no. 3, pp. 942-948. https://doi.org/10.26355/eurrev_202302_31187
Dong, A, Wu, S, Che, J, Wang, Y & Wu, R 2023, 'idopNetwork: A network tool to dissect spatial community ecology', Methods in Ecology and Evolution, vol. 14, no. 9, pp. 2272-2283. https://doi.org/10.1111/2041-210X.14172
Yang, Z, Zhu, X, Cao, Y, Ren, X & Wu, R 2023, '拟南芥株高性状全基因组上位互作网络构建', Beijing Linye Daxue Xuebao/Journal of Beijing Forestry University, vol. 45, no. 9, pp. 21-32. https://doi.org/10.12171/j.1000-1522.20220146
Chen, J, Meng, J, Hou, S, Zhang, Q, Du, J, Wang, C, Liang, D, Wu, R & Guo, Y 2023, '木本植物中microRNA的研究进展', Zhiwu Shengli Xuebao/Plant Physiology Journal, vol. 59, no. 5, pp. 817-828. https://doi.org/10.13592/j.cnki.ppj.300115
2022
Chen, C, Wang, M, Wu, R & Li, R 2022, 'A ROBUST CONSISTENT INFORMATION CRITERION FOR MODEL SELECTION BASED ON EMPIRICAL LIKELIHOOD', Statistica Sinica, vol. 32, no. 3, pp. 1205-1223. https://doi.org/10.5705/ss.202020.0254
Wang, Q, Dong, A, Jiang, L, Griffin, C & Wu, R 2022, 'A Single-Cell Omics Network Model of Cell Crosstalk during the Formation of Primordial Follicles', Cells, vol. 11, no. 3, 332. https://doi.org/10.3390/cells11030332
Wang, J, Lv, X, Feng, L, Dong, A, Liang, D & Wu, R 2022, 'A Tracing Model for the Evolutionary Equilibrium of Octoploids', Frontiers in Genetics, vol. 12, 794907. https://doi.org/10.3389/fgene.2021.794907
Yang, D, Li, F, Wang, J, Dong, A & Wu, R 2022, 'A framework to model a web of linkage disequilibria for natural allotetraploid populations', Methods in Ecology and Evolution, vol. 13, no. 2, pp. 358-366. https://doi.org/10.1111/2041-210X.13757
Sang, M, Dong, A, Wu, S, Li, F, Wang, J, Griffin, C & Wu, R 2022, 'A graph model of combination therapies', Drug Discovery Today, vol. 27, no. 5, pp. 1210-1217. https://doi.org/10.1016/j.drudis.2022.02.001
Chen, C, Shen, B, Ma, T, Wang, M & Wu, R 2022, 'A statistical framework for recovering pseudo-dynamic networks from static data', Bioinformatics, vol. 38, no. 9, pp. 2481-2487. https://doi.org/10.1093/bioinformatics/btac038
Feng, L, Dong, T, Jiang, P, Yang, Z, Dong, A, Xie, SQ, Griffin, CH & Wu, R 2022, 'An eco-evo-devo genetic network model of stress response', Horticulture Research, vol. 9, uhac135. https://doi.org/10.1093/hr/uhac135
Yan, D, Song, F, Li, Z, Sharma, A, Xie, X, Wu, T, Wang, X, He, Y, Chen, J, Huang, Q, Zhao, L, Wu, R, Niu, S, Yuan, H & Zheng, B 2022, 'Application of titanium regulates the functional components of photosynthetic apparatus in grafted seedlings of Carya cathayensis Sarg. under shade', Chemosphere, vol. 290, 133301. https://doi.org/10.1016/j.chemosphere.2021.133301
Wang, J, Feng, L, Mu, S, Dong, A, Gan, J, Wen, Z, Meng, J, Li, M, Wu, R & Sun, L 2022, 'Asymptotic tests for Hardy-Weinberg equilibrium in hexaploids', Horticulture Research, vol. 9, uhac104. https://doi.org/10.1093/hr/uhac104
Amin, M, Ott, J, Gordon, D, Wu, R, Postolache, TT, Vergare, M & Gragnoli, C 2022, 'Comorbidity of Novel CRHR2 Gene Variants in Type 2 Diabetes and Depression', International journal of molecular sciences, vol. 23, no. 17, 9819. https://doi.org/10.3390/ijms23179819
Li, K, Cheng, K, Wang, H, Zhang, Q, Yang, Y, Jin, Y, He, X & Wu, R 2022, 'Disentangling leaf-microbiome interactions in Arabidopsis thaliana by network mapping', Frontiers in Plant Science, vol. 13, 996121. https://doi.org/10.3389/fpls.2022.996121
Yang, Y, Mei, J, Chen, J, Yang, Y, Gu, Y, Tang, X, Lu, H, Yang, K, Sharma, A, Wang, X, Yan, D, Wu, R, Zheng, B & Yuan, H 2022, 'Expression analysis of PIN family genes in Chinese hickory reveals their potential roles during grafting and salt stress', Frontiers in Plant Science, vol. 13, 999990. https://doi.org/10.3389/fpls.2022.999990
Amin, M, Syed, S, Wu, R, Postolache, TT & Gragnoli, C 2022, 'Familial Linkage and Association of the NR3C1 Gene with Type 2 Diabetes and Depression Comorbidity', International journal of molecular sciences, vol. 23, no. 19, 11951. https://doi.org/10.3390/ijms231911951
Zhu, X, Sun, F, Sang, M, Ye, M, Bo, W, Dong, A & Wu, R 2022, 'Genetic Architecture of Heterophylly: Single and Multi-Leaf Genome-Wide Association Mapping in Populus euphratica', Frontiers in Plant Science, vol. 13, 870876. https://doi.org/10.3389/fpls.2022.870876
Du, J, Zhang, Q, Hou, S, Chen, J, Meng, J, Wang, C, Liang, D, Wu, R & Guo, Y 2022, 'Genome-Wide Identification and Analysis of the R2R3-MYB Gene Family in Theobroma cacao', Genes, vol. 13, no. 9, 1572. https://doi.org/10.3390/genes13091572
Perrelli, M, Wu, R, Liu, DJ, Lucchini, RG, Del Bosque-Plata, L, Vergare, MJ, Akhter, MP, Ott, J & Gragnoli, C 2022, 'Heavy metals as risk factors for human diseases – a Bayesian network approach', European Review for Medical and Pharmacological Sciences, vol. 26, no. 24, pp. 9275-9310. https://doi.org/10.26355/eurrev_202212_30681
Wu, X, Wang, J, Wu, D, Jiang, W, Gao, Z, Li, D, Wu, R, Gao, D & Zhang, Y 2022, 'Identification of new resistance loci against wheat sharp eyespot through genome-wide association study', Frontiers in Plant Science, vol. 13, 1056935. https://doi.org/10.3389/fpls.2022.1056935
Amin, M, Ott, J, Wu, R, Postolache, TT & Gragnoli, C 2022, 'Implication of Melanocortin Receptor Genes in the Familial Comorbidity of Type 2 Diabetes and Depression', International journal of molecular sciences, vol. 23, no. 15, 8350. https://doi.org/10.3390/ijms23158350
Amin, M, Wu, R, Postolache, TT & Gragnoli, C 2022, 'Linkage and association of novel DRD2 variants to the comorbidity of type 2 diabetes and depression', European Review for Medical and Pharmacological Sciences, vol. 26, no. 22, pp. 8370-8375. https://doi.org/10.26355/eurrev_202211_30372
Cao, X, Dong, A, Kang, G, Wang, X, Duan, L, Hou, H, Zhao, T, Wu, S, Liu, X, Huang, H & Wu, R 2022, 'Modeling spatial interaction networks of the gut microbiota', Gut microbes, vol. 14, no. 1, 2106103. https://doi.org/10.1080/19490976.2022.2106103
Wu, R 2022, Quantitative Methods for Precision Medicine: Pharmacogenomics in Action. CRC Press. https://doi.org/10.1201/9780429171512
Hou, SJ, Zhang, QQ, Sun, ZM, Chen, J, Meng, JQ, Liang, D, Wu, RL & Guo, YQ 2022, 'Research Progress of WIND Transcription Factor Responsing to Wound Stress and Organ Growth in Plants', China Biotechnology, vol. 42, no. 4, pp. 85-92. https://doi.org/10.13523/j.cb.2109021
Gandhi, CK, Thomas, NJ, Meixia, Y, Spear, D, Fu, C, Zhou, S, Wu, R, Keim, G, Yehya, N & Floros, J 2022, 'SNP–SNP Interactions of Surfactant Protein Genes in Persistent Respiratory Morbidity Susceptibility in Previously Healthy Children', Frontiers in Genetics, vol. 13, 815727. https://doi.org/10.3389/fgene.2022.815727
Abbasi, A, Chen, C, Gandhi, CK, Wu, R, Pardo, A, Selman, M & Floros, J 2022, 'Single Nucleotide Polymorphisms (SNP) and SNP-SNP Interactions of the Surfactant Protein Genes Are Associated With Idiopathic Pulmonary Fibrosis in a Mexican Study Group; Comparison With Hypersensitivity Pneumonitis', Frontiers in immunology, vol. 13, 842745. https://doi.org/10.3389/fimmu.2022.842745
Chen, W, Yu, W, Dong, A, Zeng, Y, Yuan, H, Zheng, B & Wu, R 2022, 'The Genetic Architecture of Juvenile Growth Traits in the Conifer Torreya grandis as Revealed by Joint Linkage and Linkage Disequilibrium Mapping', Frontiers in Plant Science, vol. 13, 858187. https://doi.org/10.3389/fpls.2022.858187
Dong, A, Zhao, J, Griffin, C & Wu, R 2022, 'The genomic physics of covid-19 pathogenesis and spread', Cells, vol. 11, no. 1, 80. https://doi.org/10.3390/cells11010080
Wang, Q, Dong, A, Zhao, J, Wang, C, Griffin, C, Gragnoli, C, Xue, F & Wu, R 2022, 'Vaginal microbiota networks as a mechanistic predictor of aerobic vaginitis', Frontiers in Microbiology, vol. 13, 998813. https://doi.org/10.3389/fmicb.2022.998813
Hou, SJ, Chen, J, Meng, JQ, Du, JH, Wang, C, Liang, D, Wu, RL & Guo, YQ 2022, '胡杨WINDs基因克隆及功能初步分析', China Biotechnology, vol. 42, no. 10, pp. 9-20. https://doi.org/10.13523/j.cb.2205005
2021
Chen, C, Jiang, L, Shen, B, Wang, M, Griffin, CH, Chinchilli, VM & Wu, R 2021, 'A Computational Atlas of Tissue-specific Regulatory Networks', Frontiers in Systems Biology, vol. 1, 764161. https://doi.org/10.3389/fsysb.2021.764161
Zhang, XY, Gong, H, Fang, Q, Zhu, X, Jiang, L & Wu, R 2021, 'A Holling Functional Response Model for Mapping QTLs Governing Interspecific Interactions', Frontiers in Genetics, vol. 12, 766372. https://doi.org/10.3389/fgene.2021.766372
Gong, H, Zhu, S, Zhu, X, Fang, Q, Zhang, XY & Wu, R 2021, 'A Multilayer Interactome Network Constructed in a Forest Poplar Population Mediates the Pleiotropic Control of Complex Traits', Frontiers in Genetics, vol. 12, 769688. https://doi.org/10.3389/fgene.2021.769688
Wu, S, Jiang, L, He, X, Jin, Y, Griffin, CH & Wu, R 2021, 'A quantitative decision theory of animal conflict', Heliyon, vol. 7, no. 7, e07621. https://doi.org/10.1016/j.heliyon.2021.e07621
Zhang, Q, Hou, S, Sun, Z, Chen, J, Meng, J, Liang, D, Wu, R & Guo, Y 2021, 'CUC转录因子研究进展', Zhiwu Shengli Xuebao/Plant Physiology Journal, vol. 57, no. 10, pp. 1852-1862. https://doi.org/10.13592/j.cnki.ppj.2021.0249
Dong, A, Feng, L, Yang, D, Wu, S, Zhao, J, Wang, J & Wu, R 2021, 'FunGraph: A statistical protocol to reconstruct omnigenic multilayer interactome networks for complex traits', STAR Protocols, vol. 2, no. 4, 100985. https://doi.org/10.1016/j.xpro.2021.100985
Yang, D, Zheng, X, Jiang, L, Ye, M, He, X, Jin, Y & Wu, R 2021, 'Functional Mapping of Phenotypic Plasticity of Staphylococcus aureus Under Vancomycin Pressure', Frontiers in Microbiology, vol. 12, 696730. https://doi.org/10.3389/fmicb.2021.696730
Jiang, P, Ma, N, Sun, F, Ye, M & Wu, R 2021, 'Functional mapping of gravitropism and phototropism for a desert tree, Populus euphratica', Frontiers in Bioscience - Landmark, vol. 26, no. 11, pp. 988-1000. https://doi.org/10.52586/5003
Pandey, AK, Jiang, L, Moshelion, M, Gosa, SC, Sun, T, Lin, Q, Wu, R & Xu, P 2021, 'Functional physiological phenotyping with functional mapping: A general framework to bridge the phenotype-genotype gap in plant physiology', iScience, vol. 24, no. 8, 102846. https://doi.org/10.1016/j.isci.2021.102846
Gong, H, Zhang, XY, Zhu, S, Jiang, L, Zhu, X, Fang, Q & Wu, R 2021, 'Genetic Architecture of Multiphasic Growth Covariation as Revealed by a Nonlinear Mixed Mapping Framework', Frontiers in Plant Science, vol. 12, 711219. https://doi.org/10.3389/fpls.2021.711219
Feng, L, Jiang, P, Li, C, Zhao, J, Dong, A, Yang, D & Wu, R 2021, 'Genetic dissection of growth trajectories in forest trees: From FunMap to FunGraph', Forestry Research, vol. 1, 19. https://doi.org/10.48130/FR-2021-0019
Zhang, Q, Hou, S, Sun, Z, Chen, J, Meng, J, Liang, D, Wu, R & Guo, Y 2021, 'Genome-wide identification and analysis of the mads-box gene family in theobroma cacao', Genes, vol. 12, no. 11, 1799. https://doi.org/10.3390/genes12111799
Fu, Y, Li, F, Mu, S, Jiang, L, Ye, M & Wu, R 2021, 'Heterophylly Quantitative Trait Loci Respond to Salt Stress in the Desert Tree Populus euphratica', Frontiers in Plant Science, vol. 12, 692494. https://doi.org/10.3389/fpls.2021.692494
Yang, D, Jin, Y, He, X, Dong, A, Wang, J & Wu, R 2021, 'Inferring multilayer interactome networks shaping phenotypic plasticity and evolution', Nature communications, vol. 12, no. 1, 5304. https://doi.org/10.1038/s41467-021-25086-5
Xu, P, Wang, Y, Sun, F, Wu, R, Du, H, Wang, Y, Jiang, L, Wu, X, Wu, X, Yang, L, Xing, N, Hu, Y, Wang, B, Huang, Y, Tao, Y, Gao, Q, Liang, C, Li, Y, Lu, Z & Li, G 2021, 'Long-read genome assembly and genetic architecture of fruit shape in the bottle gourd', Plant Journal, vol. 107, no. 3, pp. 956-968. https://doi.org/10.1111/tpj.15358
Wang, H, Ye, M, Fu, Y, Dong, A, Zhang, M, Feng, L, Zhu, X, Bo, W, Jiang, L, Griffin, CH, Liang, D & Wu, R 2021, 'Modeling genome-wide by environment interactions through omnigenic interactome networks', Cell Reports, vol. 35, no. 6, 109114. https://doi.org/10.1016/j.celrep.2021.109114
He, X, Zhang, Q, Li, B, Jin, Y, Jiang, L & Wu, R 2021, 'Network mapping of root–microbe interactions in Arabidopsis thaliana', npj Biofilms and Microbiomes, vol. 7, no. 1, 72. https://doi.org/10.1038/s41522-021-00241-4
Wu, R & Jiang, L 2021, 'Recovering dynamic networks in big static datasets', Physics Reports, vol. 912, pp. 1-57. https://doi.org/10.1016/j.physrep.2021.01.003
Luan, MW, Lin, JL, Wang, YF, Liu, YX, Xiao, CL, Wu, R & Xie, SQ 2021, 'SCSit: A high-efficiency preprocessing tool for single-cell sequencing data from SPLiT-seq', Computational and Structural Biotechnology Journal, vol. 19, pp. 4574-4580. https://doi.org/10.1016/j.csbj.2021.08.021
Gandhi, CK, Chen, C, Amatya, S, Yang, L, Fu, C, Zhou, S, Wu, R, Buendía-Roldan, I, Selman, M, Pardo, A & Floros, J 2021, 'SNP and Haplotype Interaction Models Reveal Association of Surfactant Protein Gene Polymorphisms With Hypersensitivity Pneumonitis of Mexican Population', Frontiers in Medicine, vol. 7, 588404. https://doi.org/10.3389/fmed.2020.588404
Amatya, S, Ye, M, Yang, L, Gandhi, CK, Wu, R, Nagourney, B & Floros, J 2021, 'Single Nucleotide Polymorphisms Interactions of the Surfactant Protein Genes Associated With Respiratory Distress Syndrome Susceptibility in Preterm Infants', Frontiers in Pediatrics, vol. 9, 682160. https://doi.org/10.3389/fped.2021.682160
Wu, R 2021, 'Specialty Grand Challenge: Systems Genetics', Frontiers in Systems Biology, vol. 1, 738155. https://doi.org/10.3389/fsysb.2021.738155
Sun, L, Dong, A, Griffin, C & Wu, R 2021, 'Statistical mechanics of clock gene networks underlying circadian rhythms', Applied Physics Reviews, vol. 8, no. 2, 021313. https://doi.org/10.1063/5.0029993
Wang, M, Chen, J, Zhou, F, Yuan, J, Chen, L, Wu, R, Liu, Y & Zhang, Q 2022, 'The ties of brotherhood between japonica and indica rice for regional adaptation', Science China Life Sciences, vol. 65, no. 7, pp. 1369-1379. https://doi.org/10.1007/s11427-021-2019-x
2020
Jiang, L, Liu, X, He, X, Jin, Y, Cao, Y, Zhan, X, Griffin, CH, Gragnoli, C & Wu, R 2021, 'A behavioral model for mapping the genetic architecture of gut-microbiota networks', Gut microbes, vol. 13, no. 1, 1820847. https://doi.org/10.1080/19490976.2020.1820847
Chen, C, Shen, B, Liu, A, Wu, R & Wang, M 2021, 'A multiple robust propensity score method for longitudinal analysis with intermittent missing data', Biometrics, vol. 77, no. 2, pp. 519-532. https://doi.org/10.1111/biom.13330
Sang, M, Rice, S, Jiang, L, Liu, X, Gragnoli, C, Belani, CP & Wu, R 2020, 'A rewiring model of intratumoral interaction networks', Computational and Structural Biotechnology Journal, vol. 18, pp. 45-51. https://doi.org/10.1016/j.csbj.2019.11.009
Griffin, C, Jiang, L & Wu, R 2020, 'Analysis of quasi-dynamic ordinary differential equations and the quasi-dynamic replicator', Physica A: Statistical Mechanics and its Applications, vol. 555, 124422. https://doi.org/10.1016/j.physa.2020.124422
Gandhi, CK, Chen, C, Wu, R, Yang, L, Thorenoor, N, Thomas, NJ, Diangelo, SL, Spear, D, Keim, G, Yehya, N & Floros, J 2020, 'Association of SNP-SNP interactions of surfactant protein genes with pediatric acute respiratory failure', Journal of Clinical Medicine, vol. 9, no. 4, 1183. https://doi.org/10.3390/jcm9041183
Jiang, L, Ren, X & Wu, R 2021, 'Computational characterization of double reduction in autotetraploid natural populations', Plant Journal, vol. 105, no. 6, pp. 1703-1709. https://doi.org/10.1111/tpj.15126
Sun, L, Jiang, L, Grant, CN, Wang, HG, Gragnoli, C, Liu, Z & Wu, R 2020, 'Computational identification of gene networks as a biomarker of neuroblastoma risk', Cancers, vol. 12, no. 8, 2086, pp. 1-17. https://doi.org/10.3390/cancers12082086
Jiang, L, Shi, H, Sang, M, Zheng, C, Cao, Y, Zhu, X, Zhuo, X, Cheng, T, Zhang, Q, Wu, R & Sun, L 2020, 'Corrigendum: A Computational Model for Inferring QTL Control Networks Underlying Developmental Covariation (Frontiers in Plant Science, (2019), 10, 10.3389/fpls.2019.01557)', Frontiers in Plant Science, vol. 11, 45. https://doi.org/10.3389/fpls.2020.00045
Zheng, C, Tan, L, Sang, M, Ye, M & Wu, R 2020, 'Genetic adaptation of Tibetan poplar (Populus szechuanica var. tibetica) to high altitudes on the Qinghai–Tibetan Plateau', Ecology and Evolution, vol. 10, no. 20, pp. 10974-10985. https://doi.org/10.1002/ece3.6508
Shen, S, Zhang, Q, Shi, Y, Sun, Z, Zhang, Q, Hou, S, Wu, R, Jiang, L, Zhao, X & Guo, Y 2020, 'Genome-wide analysis of the NAC domain transcription factor gene family in Theobroma cacao', Genes, vol. 11, no. 1, 35. https://doi.org/10.3390/genes11010035
Zhang, Q, Su, Z, Guo, Y, Zhang, S, Jiang, L & Wu, R 2020, 'Genome-wide association studies of callus differentiation for the desert tree, Populus euphratica', Tree Physiology, vol. 40, no. 12, pp. 1762-1777. https://doi.org/10.1093/treephys/tpaa098
Wang, Z, Wang, N, Wang, Z, Jiang, L, Wang, Y, Li, J & Wu, R 2020, 'HiGwas: How to compute longitudinal GWAS data in population designs', Bioinformatics, vol. 36, no. 14, pp. 4222-4224. https://doi.org/10.1093/bioinformatics/btaa294
Ye, M, Zhu, X, Gao, P, Jiang, L & Wu, R 2020, 'Identification of Quantitative Trait Loci for Altitude Adaptation of Tree Leaf Shape With Populus szechuanica in the Qinghai-Tibetan Plateau', Frontiers in Plant Science, vol. 11, 632. https://doi.org/10.3389/fpls.2020.00632
Yang, S, Wen, J, Eckert, ST, Wang, Y, Liu, DJ, Wu, R, Li, R & Zhan, X 2020, 'Prioritizing genetic variants in GWAS with lasso using permutation-assisted tuning', Bioinformatics, vol. 36, no. 12, pp. 3811-3817. https://doi.org/10.1093/bioinformatics/btaa229
Sun, L, Gan, J, Jiang, L & Wu, R 2021, 'Recursive Test of Hardy-Weinberg Equilibrium in Tetraploids', Trends in Genetics, vol. 37, no. 6, pp. 504-513. https://doi.org/10.1016/j.tig.2020.11.006
Jiang, L, Griffin, CH & Wu, R 2020, 'SEGN: Inferring real-time gene networks mediating phenotypic plasticity', Computational and Structural Biotechnology Journal, vol. 18, pp. 2510-2521. https://doi.org/10.1016/j.csbj.2020.08.029
Zhang, M, Zhang, S, Ye, M, Jiang, L, Vallejos, CE & Wu, R 2020, 'The genetic control of leaf allometry in the common bean, Phaseolus vulgaris', BMC Genetics, vol. 21, no. 1, 29. https://doi.org/10.1186/s12863-020-00838-2
Sun, Z, Zhang, Q, Zhang, Q, Hou, S, Wu, R & Guo, Y 2020, '植物器官从头发生的细胞发育谱系研究进展', Zhiwu Shengli Xuebao/Plant Physiology Journal, vol. 56, no. 8, pp. 1729-1736. https://doi.org/10.13592/j.cnki.ppj.2019.0461